# Copyright Swiss Data Science Center (SDSC). A partnership between
# École Polytechnique Fédérale de Lausanne (EPFL) and
# Eidgenössische Technische Hochschule Zürich (ETHZ).
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Activity JSON-LD schema."""
from marshmallow import EXCLUDE, pre_dump
from renku.command.schema.agent import PersonSchema, SoftwareAgentSchema
from renku.command.schema.annotation import AnnotationSchema
from renku.command.schema.calamus import JsonLDSchema, Nested, fields, oa, prov, renku, schema
from renku.command.schema.entity import CollectionSchema, EntitySchema
from renku.command.schema.plan import PlanSchema
from renku.command.schema.workflow_file import WorkflowFileCompositePlanSchema, WorkflowFilePlanSchema
from renku.domain_model.provenance.activity import (
Activity,
Association,
Generation,
Usage,
WorkflowFileActivityCollection,
)
from renku.domain_model.provenance.parameter import ParameterValue
[docs]class AssociationSchema(JsonLDSchema):
"""Association schema."""
agent = Nested(prov.agent, [SoftwareAgentSchema, PersonSchema])
id = fields.Id()
plan = Nested(prov.hadPlan, [PlanSchema, WorkflowFilePlanSchema, WorkflowFileCompositePlanSchema])
[docs]class UsageSchema(JsonLDSchema):
"""Usage schema."""
id = fields.Id()
# TODO: DatasetSchema, DatasetFileSchema
entity = Nested(prov.entity, [EntitySchema, CollectionSchema])
[docs]class GenerationSchema(JsonLDSchema):
"""Generation schema."""
id = fields.Id()
# TODO: DatasetSchema, DatasetFileSchema
entity = Nested(prov.qualifiedGeneration, [EntitySchema, CollectionSchema], reverse=True)
[docs]class ParameterValueSchema(JsonLDSchema):
"""ParameterValue schema."""
id = fields.Id()
parameter = fields.IRI(schema.valueReference, attribute="parameter_id")
value = fields.Raw(schema.value)
[docs]class ActivitySchema(JsonLDSchema):
"""Activity schema."""
agents = Nested(prov.wasAssociatedWith, [PersonSchema, SoftwareAgentSchema], many=True)
annotations = Nested(oa.hasTarget, AnnotationSchema, reverse=True, many=True)
association = Nested(prov.qualifiedAssociation, AssociationSchema)
ended_at_time = fields.DateTime(prov.endedAtTime, format="iso", add_value_types=True)
generations = Nested(prov.activity, GenerationSchema, reverse=True, many=True, load_default=None)
id = fields.Id()
invalidations = Nested(prov.wasInvalidatedBy, EntitySchema, reverse=True, many=True, load_default=None)
parameters = Nested(
renku.parameter,
ParameterValueSchema,
many=True,
load_default=None,
)
path = fields.String(prov.atLocation)
project_id = fields.IRI(renku.hasActivity, reverse=True)
started_at_time = fields.DateTime(prov.startedAtTime, format="iso", add_value_types=True)
usages = Nested(prov.qualifiedUsage, UsageSchema, many=True)
[docs] @pre_dump(pass_many=True)
def removes_ms(self, objs, many, **kwargs):
"""Remove milliseconds from datetimes.
Note: since DateField uses `strftime` as format, which only supports timezone info without a colon
e.g. `+0100` instead of `+01:00`, we have to deal with milliseconds manually instead of using a format string.
"""
def _replace_times(obj):
obj.unfreeze()
obj.started_at_time = obj.started_at_time.replace(microsecond=0)
obj.ended_at_time = obj.ended_at_time.replace(microsecond=0)
obj.freeze()
if many:
for obj in objs:
_replace_times(obj)
return objs
_replace_times(objs)
return objs
[docs]class WorkflowFileActivityCollectionSchema(JsonLDSchema):
"""WorkflowFileActivityCollection schema."""
activities = Nested(schema.hasPart, ActivitySchema, many=True)
agents = Nested(prov.wasAssociatedWith, [PersonSchema, SoftwareAgentSchema], many=True)
association = Nested(prov.qualifiedAssociation, AssociationSchema)
ended_at_time = fields.DateTime(prov.endedAtTime, add_value_types=True)
id = fields.Id()
project_id = fields.IRI(renku.hasActivityCollection, reverse=True)
started_at_time = fields.DateTime(prov.startedAtTime, add_value_types=True)