Source code for

# -*- coding: utf-8 -*-
# Copyright 2018-2020 - Swiss Data Science Center (SDSC)
# A partnership between École Polytechnique Fédérale de Lausanne (EPFL) and
# Eidgenössische Technische Hochschule Zürich (ETHZ).
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# See the License for the specific language governing permissions and
# limitations under the License.
"""Wrap Git client."""

import glob
import itertools
import os
import sys
import tempfile
import time
import uuid
from collections import defaultdict
from contextlib import contextmanager
from itertools import zip_longest
from pathlib import Path

import attr
import gitdb

from renku.core import errors
from renku.core.utils.urls import remove_credentials

STARTED_AT = int(time.time() * 1e3)

def _mapped_std_streams(lookup_paths, streams=('stdin', 'stdout', 'stderr')):
    """Get a mapping of standard streams to given paths."""
    # FIXME add device number too
    standard_inos = {}
    for stream in streams:
            stream_stat = os.fstat(getattr(sys, stream).fileno())
            key = stream_stat.st_dev, stream_stat.st_ino
            standard_inos[key] = stream
        except Exception:  # FIXME UnsupportedOperation
        # FIXME if not getattr(sys, stream).istty()

    def stream_inos(paths):
        """Yield tuples with stats and path."""
        for path in paths:
                stat = os.stat(path)
                key = (stat.st_dev, stat.st_ino)
                if key in standard_inos:
                    yield standard_inos[key], path
            except FileNotFoundError:  # pragma: no cover

    return dict(stream_inos(lookup_paths)) if standard_inos else {}

def _clean_streams(repo, mapped_streams):
    """Clean mapped standard streams."""
    for stream_name in ('stdout', 'stderr'):
        stream = mapped_streams.get(stream_name)
        if not stream:

        path = os.path.relpath(stream, start=repo.working_dir)
        if (path, 0) not in repo.index.entries:
            blob = repo.index.entries[(path, 0)].to_blob(repo)
            with open(path, 'wb') as fp:

def _expand_directories(paths):
    """Expand directory with all files it contains."""
    processed_paths = set()
    for path in paths:
        for matched_path in glob.glob(path, recursive=True):
            if matched_path in processed_paths:
            path_ = Path(matched_path)
            if path_.is_dir():
                for expanded in path_.rglob('*'):
                    yield str(expanded)
                yield matched_path

[docs]@attr.s class GitCore: """Wrap Git client.""" repo = attr.ib(init=False) """Store an instance of the Git repository.""" def __attrs_post_init__(self): """Initialize computed attributes.""" from git import InvalidGitRepositoryError, Repo #: Create an instance of a Git repository for the given path. try: self.repo = Repo(str(self.path)) except InvalidGitRepositoryError: self.repo = None @property def modified_paths(self): """Return paths of modified files.""" return [ item.b_path for item in self.repo.index.diff(None) if item.b_path ] @property def dirty_paths(self): """Get paths of dirty files in the repository.""" repo_path = self.repo.working_dir return { os.path.join(repo_path, p) for p in self.repo.untracked_files + self.modified_paths } @property def candidate_paths(self): """Return all paths in the index and untracked files.""" repo_path = self.repo.working_dir return [ os.path.join(repo_path, path) for path in itertools.chain( (x[0] for x in self.repo.index.entries), self.repo.untracked_files, ) ]
[docs] def find_ignored_paths(self, *paths): """Return ignored paths matching ``.gitignore`` file.""" from git.exc import GitCommandError try: return self.repo.git.check_ignore(*paths).split() except GitCommandError: pass
[docs] def find_attr(self, *paths): """Return map with path and its attributes.""" from git.exc import GitCommandError attrs = defaultdict(dict) try: data = self.repo.git.check_attr('-z', '-a', '--', *paths) for file, name, value in zip_longest( *[iter(data.strip('\0').split('\0'))] * 3 ): if file: attrs[file][name] = value except GitCommandError: pass return attrs
[docs] def remove_unmodified(self, paths, autocommit=True): """Remove unmodified paths and return their names.""" tested_paths = set(_expand_directories(paths)) # Keep only unchanged files in the output paths. tracked_paths = { diff.b_path for diff in self.repo.index.diff(None) if diff.change_type in {'A', 'R', 'M', 'T'} and diff.b_path in tested_paths } unchanged_paths = tested_paths - tracked_paths # Fix tracking of unchanged files by removing them first. if autocommit and unchanged_paths: self.repo.index.remove( unchanged_paths, cached=True, r=True, ignore_unmatch=True ) self.repo.index.commit( 'renku: automatic removal of unchanged files' ) self.repo.index.add(unchanged_paths) return unchanged_paths
[docs] def ensure_clean(self, ignore_std_streams=False): """Make sure the repository is clean.""" dirty_paths = self.dirty_paths mapped_streams = _mapped_std_streams(dirty_paths) if ignore_std_streams: if dirty_paths - set(mapped_streams.values()): _clean_streams(self.repo, mapped_streams) raise errors.DirtyRepository(self.repo) elif self.repo.is_dirty(untracked_files=True): _clean_streams(self.repo, mapped_streams) raise errors.DirtyRepository(self.repo)
[docs] def ensure_untracked(self, path): """Ensure that path is not part of git untracked files.""" untracked = self.repo.untracked_files for file_path in untracked: is_parent = str(file_path).startswith(path) is_equal = path == file_path if is_parent or is_equal: raise errors.DirtyRenkuDirectory(self.repo)
[docs] def ensure_unstaged(self, path): """Ensure that path is not part of git staged files.""" try: staged = self.repo.index.diff('HEAD') for file_path in staged: is_parent = str(file_path.a_path).startswith(path) is_equal = path == file_path.a_path if is_parent or is_equal: raise errors.DirtyRenkuDirectory(self.repo) except gitdb.exc.BadName: pass
[docs] def setup_credential_helper(self): """Setup git credential helper to ``cache`` if not set already.""" credential_helper = self.repo.config_reader().get_value( 'credential', 'helper', '' ) if not credential_helper: with self.repo.config_writer() as w: w.set_value('credential', 'helper', 'cache')
[docs] @contextmanager def commit( self, commit_only=None, commit_empty=True, raise_if_empty=False, commit_message=None ): """Automatic commit.""" from git import Actor from renku.version import __version__, version_url diff_before = set() if commit_only == COMMIT_DIFF_STRATEGY: staged = {item.a_path for item in self.repo.index.diff(None)} modified = {item.a_path for item in self.repo.index.diff('HEAD')} if staged or modified: self.repo.git.reset() # Exclude files created by pipes. diff_before = { file_ for file_ in self.repo.untracked_files if STARTED_AT - int(Path(file_).stat().st_ctime * 1e3) >= 1e3 } if isinstance(commit_only, list): for path_ in commit_only: self.ensure_untracked(str(path_)) self.ensure_unstaged(str(path_)) yield committer = Actor('renku {0}'.format(__version__), version_url) change_types = {} if commit_only == COMMIT_DIFF_STRATEGY: # Get diff generated in command. change_types = { item.a_path: item.change_type for item in self.repo.index.diff(None) } staged_after = set(change_types.keys()) modified_after_change_types = { item.a_path: item.change_type for item in self.repo.index.diff('HEAD') } modified_after = set(modified_after_change_types.keys()) change_types.update(modified_after_change_types) diff_after = set(self.repo.untracked_files)\ .union(staged_after)\ .union(modified_after) # Remove files not touched in command. commit_only = list(diff_after - diff_before) if isinstance(commit_only, list): for path_ in commit_only: p = self.path / path_ if p.exists() or change_types.get(path_) == 'D': self.repo.git.add(path_) if not commit_only: self.repo.git.add('--all') if not commit_empty and not self.repo.index.diff('HEAD'): if raise_if_empty: raise errors.NothingToCommit() return if commit_message and not isinstance(commit_message, str): raise errors.CommitMessageEmpty() elif not commit_message: argv = [os.path.basename(sys.argv[0]) ] + [remove_credentials(arg) for arg in sys.argv[1:]] commit_message = ' '.join(argv) # Ignore pre-commit hooks since we have already done everything. self.repo.index.commit( commit_message, committer=committer, skip_hooks=True, )
[docs] @contextmanager def transaction( self, clean=True, commit=True, commit_empty=True, commit_message=None, commit_only=None, ignore_std_streams=False, raise_if_empty=False, up_to_date=False, ): """Perform Git checks and operations.""" if clean: self.ensure_clean(ignore_std_streams=ignore_std_streams) if up_to_date: # TODO # Fetch origin/master # is_ancestor('origin/master', 'HEAD') pass if commit: with self.commit( commit_empty=commit_empty, commit_message=commit_message, commit_only=commit_only, raise_if_empty=raise_if_empty ): yield self else: yield self
[docs] @contextmanager def worktree( self, path=None, branch_name=None, commit=None, merge_args=('--ff-only', ), ): """Create new worktree.""" from git import GitCommandError, NULL_TREE from renku.core.utils.contexts import Isolation delete = path is None path = path or tempfile.mkdtemp() branch_name = branch_name or 'renku/run/isolation/' + uuid.uuid4().hex # TODO sys.argv new_branch = False if commit is NULL_TREE: args = ['add', '--detach', path] self.repo.git.worktree(*args) client = attr.evolve(self, path=path) client.repo.git.checkout('--orphan', branch_name) client.repo.git.rm('-rf', '*') else: args = ['add', '-b', branch_name, path] if commit: args.append(commit) self.repo.git.worktree(*args) client = attr.evolve(self, path=path) new_branch = True client.repo.config_reader = self.repo.config_reader # Keep current directory relative to repository root. relative = Path('.').resolve().relative_to(self.path) # Reroute standard streams original_mapped_std = _mapped_std_streams(self.candidate_paths) mapped_std = {} for name, stream in original_mapped_std.items(): stream_path = Path(path) / (Path(stream).relative_to(self.path)) stream_path = stream_path.absolute() if not stream_path.exists(): stream_path.parent.mkdir(parents=True, exist_ok=True) stream_path.touch() mapped_std[name] = stream_path _clean_streams(self.repo, original_mapped_std) new_cwd = Path(path) / relative new_cwd.mkdir(parents=True, exist_ok=True) with Isolation(cwd=str(new_cwd), **mapped_std): yield client try: self.repo.git.merge(branch_name, *merge_args) except GitCommandError: raise errors.FailedMerge(self.repo, branch_name, merge_args) if delete: self.repo.git.worktree('remove', path) if new_branch: # delete the created temporary branch self.repo.git.branch('-d', branch_name) self.checkout_paths_from_storage()