Changes

0.11.2 (2020-09-24)

Bug Fixes

  • cli: fixes libxslt dependency in docker image (#1534) (491bae7)

  • core: fixes ‘doi:…’ import (#1536) (f653c79)

  • core: fixes duplicate ‘renku:Run’ ids on repeat execution of migrations (#1532) (4ce6f3c)

Features

  • cli: show existing paths when initializing non-empty dir (#1535) (07c559f)

  • core: follow URL redirections for dataset files (#1516) (5a37b3c)

  • dataset: flattened JSON-LD metadata (#1518) (458ddb9)

  • service: add additional template parameters (#1469) (6372a32)

  • service: adds additional fields to datasets listings (#1508) (f8a395f)

  • service: adds project details and renku operation on jobs endpoint (#1492) (6b3fafd)

  • service: execute read operations via git remote (#1488) (84a0eb3)

  • workflow: avoid unnecessary parent runs (#1476) (b908ffd)

0.11.1 (2020-08-18)

Bug Fixes

  • fixes shacl for DatasetFile when used inside a qualifiedGeneration (#1477) (99dd4a4)

0.11.0 (2020-08-14)

Bug Fixes

  • cli: disable version check in githook calls (#1300) (5132db3)

  • core: fix paths in migration of workflows (#1371) (8c3d34b)

  • core: Fixes SoftwareAgent person context (#1323) (a207a7f)

  • core: Only update project metadata if any migrations were executed (#1308) (1056a03)

  • service: adds more custom logging and imp. except handling (#1435) (6c3adb5)

  • service: fixes handlers for internal loggers (#1433) (a312f7c)

  • service: move project_id to query string on migrations check (#1367) (0f89726)

  • tests: integration tests (#1351) (3974a39)

Features

  • cli: Adds renku save command (#1273) (4ddc1c2)

  • cli: prompt for missing variables (1e1d408), closes #1126

  • cli: Show detailed commands for renku log output (#1345) (19fb819)

  • core: Calamus integration (#1281) (bda538f)

  • core: configurable data dir (#1347) (e388773)

  • core: disabling of inputs/outputs auto-detection (#1406) (3245ca0)

  • core: migration check in core (#1320) (4bc52f4)

  • core: Move workflow serialisation over to calamus (#1386) (f0fbc49)

  • core: save and load workflow as jsonld (#1185) (d403289)

  • core: separate models for migrations (#1431) (127d606)

  • dataset: source and url for DatasetFile (#1451) (b4fa5db)

  • service: added endpoints to execute all migrations on a project (#1322) (aca8cc2)

  • service: adds endpoint for explicit migrations check (#1326) (146b1a7)

  • service: adds source and destination versions to migrations check (#1372) (ea76b48)

  • decode base64 headers (#1407) (9901cc3)

  • service: adds endpoints for dataset remove (#1383) (289e4b9)

  • service: adds endpoints for unlinking files from a dataset (#1314) (1b78b16)

  • service: async migrations execution (#1344) (ff66953)

  • service: create new projects from templates (#1287) (552f85c), closes #862

0.10.5 (2020-07-16)

Bug Fixes

  • core: Pin dependencies to prevent downstream dependency updates from breaking renku. Fix pyshacl dependency. (#785) (30beedd)

  • core: Fixes SoftwareAgent person context. (#1323) (fa62f58)

0.10.4 (2020-05-18)

Bug Fixes

  • dataset: update default behaviour and messaging on dataset unlink (#1275) (98d6728)

  • dataset: correct url in different domain (#1211) (49e8b8b)

Features

  • cli: Adds warning messages for LFS, fix output redirection (#1199) (31969f5)

  • core: Adds lfs file size limit and lfs ignore file (#1210) (1f3c81c)

  • core: Adds renku storage clean command (#1235) (7029400)

  • core: git hook to avoid committing large files (#1238) (e8f1a8b)

  • core: renku doctor check for lfs migrate info (#1234) (480da06)

  • dataset: fail early when external storage not installed (#1239) (e6ea6da)

  • core: project clone API support for revision checkout (#1208) (74116e9)

  • service: protected branches support (#1222) (8405ce5)

  • dataset: doi variations for import (#1216) (0f329dd)

  • dataset: keywords in metadata (#1209) (f98a800)

  • dataset: no failure when adding ignored files (#1213) (b1e275f)

  • service: read template manifest (#1254) (7eac85b)

0.10.3 (2020-04-22)

Bug Fixes

Features

0.10.1 (2020-03-31)

Bug Fixes

Features

0.10.0 (2020-03-25)

This release brings about several important Dataset features:

  • importing renku datasets (#838)

  • working with data external to the repository (#974)

  • editing dataset metadata (#1111)

Please see the Dataset documentation for details.

Additional features were implemented for the backend service to facilitate a smoother user experience for dataset file manipulation.

IMPORTANT: starting with this version, a new metadata migration mechanism is in place (#1003). Renku commands will insist on migrating a project immediately if the metadata is found to be outdated.

Bug Fixes

  • cli: consistenly show correct contexts (#1096) (b333f0f)

  • dataset: –no-external-storage flag not working (#1130) (c183e97)

  • dataset: commit only updated dataset files (#1116) (d9739df)

  • datasets: fixed importing large amount of small files (#1119) (8d61473)

  • datasets: raises correct error message on import of protected dataset (#1112) (e579904)

Features

0.9.1 (2020-02-24)

Bug Fixes

Features

0.9.0 (2020-02-07)

Bug Fixes

  • adds git user check before running renku init (#892) (2e52dff)

  • adds sorting to file listing (#960) (bcf6bcd)

  • avoid empty commits when adding files (#842) (8533a7a)

  • Fixes dataset naming (#898) (418deb3)

  • Deletes temporary branch after renku init –force (#887) (eac0463)

  • enforces label on SoftwareAgent (#869) (71badda)

  • Fixes JSON-LD translation and related issues (#846) (65e5469)

  • Fixes renku run error message handling (#961) (81d31ff)

  • Fixes renku update workflow failure handling and renku status error handling (#888) (3879124)

  • Fixes sameAs property to follow schema.org spec (#944) (291380e)

  • handle missing renku directory (#989) (f938be9)

  • resolves symlinks when pulling LFS (#981) (68bd8f5)

  • serializes all zenodo metadata (#941) (787978a)

  • Fixes various bugs in dataset import (#882) (be28bf5)

Features

0.8.0 (2019-11-21)

Bug Fixes

  • addressed CI problems with git submodules (#783) (0d3eeb7)

  • adds simple check on empty filename (#786) (8cd061b)

  • ensure all Person instances have valid ids (4f80efc), closes #812

  • Fixes jsonld issue when importing from dataverse (#759) (ffe36c6)

  • fixes nested type scoped handling if a class only has a single class (#804) (16d03b6)

  • ignore deleted paths in generated entities (86fedaf), closes #806

  • integration tests (#831) (a4ad7f9)

  • make Creator a subclass of Person (ac9bac3), closes #793

  • Redesign scoped context in jsonld (#750) (2b1948d)

Features

0.7.0 (2019-10-15)

Bug Fixes

  • use UI-resolved project path as project ID (#701) (dfcc9e6)

0.6.1 (2019-10-10)

Bug Fixes

  • add .renku/tmp to default .gitignore (#728) (6212148)

  • dataset import causes renku exception due to duplicate LocalClient (#724) (89411b0)

  • delete new dataset ref if file add fails (#729) (2dea711)

  • fixes bug with deleted files not getting committed (#741) (5de4b6f)

  • force current project for entities (#707) (538ef07)

  • integration tests for #681 (#747) (b08435d)

  • use commit author for project creator (#715) (1a40ebe), closes #713

  • zenodo dataset import error (f1d623a)

Features

0.6.0 (2019-09-18)

Bug Fixes

  • adds _label and commit data to imported dataset files, single commit for imports (#651) (75ce369)

  • always add commit to dataset if possible (#648) (7659bc8), closes #646

  • cleanup needed for integration tests on py35 (#653) (fdd7215)

  • fixed serialization of datetime to iso format (#629) (693d59d)

  • fixes broken integration test (#649) (04eba66)

  • hide image, pull, runner, show, workon and deactivate commands (#672) (a3e9998)

  • integration tests fixed (#685) (f0ea8f0)

  • migration of old datasets (#639) (4d4d7d2)

  • migration timezones (#683) (58c2de4)

  • Removes unneccesary call to git lfs with no paths (#658) (e32d48b)

  • renku home directory overwrite in tests (#657) (90e1c48)

  • upload metadata before actual files (#652) (95ed468)

  • use latest_html for version check (#647) (c6b0309), closes #641

  • user-related metadata (#655) (44183e6)

  • zenodo export failing with relative paths (d40967c)

Features

0.5.2 (2019-07-26)

Bug Fixes

  • safe_path check always operates on str (#603) (7c1c34e)

Features

0.5.1 (2019-07-12)

Bug Fixes

  • ensure external storage is handled correctly (#592) (7938ac4)

  • only check local repo for lfs filter (#575) (a64dc79)

  • cli: allow renku run with many inputs (f60783e), closes #552

  • added check for overwriting datasets (#541) (8c697fb)

  • escape whitespaces in notebook name (#584) (0542fcc)

  • modify json-ld for datasets (#534) (ab6a719), closes #525 #526

  • refactored tests and docs to align with updated pydoctstyle (#586) (6f981c8)

  • cli: add check of missing references (9a373da)

  • cli: fail when removing non existing dataset (dd728db)

  • status: fix renku status output when not in root folder (#564) (873270d), closes #551

  • added dependencies for SSL support (#565) (4fa0fed)

  • datasets: strip query string from data filenames (450898b)

  • fixed serialization of creators (#550) (6a9173c)

  • updated docs (#539) (ff9a67c)

  • cli: remove dataset aliases (6206e62)

  • cwl: detect script as input parameter (e23b75a), closes #495

  • deps: updated dependencies (691644d)

Features

0.5.0 (2019-03-28)

Bug Fixes

  • api: make methods lock free (1f63964), closes #486

  • use safe_load for parsing yaml (5383d1e), closes #464

  • datasets: link flag on dataset add (eae30f4)

Features

  • api: list datasets from a commit (04a9fe9)

  • cli: add dataset rm command (a70c7ce)

  • cli: add rm command (cf0f502)

  • cli: configurable format of dataset output (d37abf3)

  • dataset: add existing file from current repo (575686b), closes #99

  • datasets: added ls-files command (ccc4f59)

  • models: reference context for relative paths (5d1e8e7), closes #452

  • add JSON-LD output format for datasets (c755d7b), closes #426

  • generate Makefile with log –format Makefile (1e440ce)

v0.4.0

(released 2019-03-05)

  • Adds renku mv command which updates dataset metadata, .gitattributes and symlinks.

  • Pulls LFS objects from submodules correctly.

  • Adds listing of datasets.

  • Adds reduced dot format for renku log.

  • Adds doctor command to check missing files in datasets.

  • Moves dataset metadata to .renku/datasets and adds migrate datasets command and uses UUID for metadata path.

  • Gets git attrs for files to prevent duplicates in .gitattributes.

  • Fixes renku show outputs for directories.

  • Runs Git LFS checkout in a worktrees and lazily pulls necessary LFS files before running commands.

  • Asks user before overriding an existing file using renku init or renku runner template.

  • Fixes renku init --force in an empty dir.

  • Renames CommitMixin._location to _project.

  • Addresses issue with commits editing multiple CWL files.

  • Exports merge commits for full lineage.

  • Exports path and parent directories.

  • Adds an automatic check for the latest version.

  • Simplifies issue submission from traceback to GitHub or Sentry. Requires SENTRY_DSN variable to be set and sentry-sdk package to be installed before sending any data.

  • Removes outputs before run.

  • Allows update of directories.

  • Improves readability of the status message.

  • Checks ignored path when added to a dataset.

  • Adds API method for finding ignored paths.

  • Uses branches for init --force.

  • Fixes CVE-2017-18342.

  • Fixes regex for parsing Git remote URLs.

  • Handles --isolation option using git worktree.

  • Renames client.git to client.repo.

  • Supports python -m renku.

  • Allows ‘.’ and ‘-‘ in repo path.

v0.3.3

(released 2018-12-07)

  • Fixes generated Homebrew formula.

  • Renames renku pull path to renku storage pull with deprecation warning.

v0.3.2

(released 2018-11-29)

  • Fixes display of workflows in renku log.

v0.3.1

(released 2018-11-29)

  • Fixes issues with parsing remote Git URLs.

v0.3.0

(released 2018-11-26)

  • Adds JSON-LD context to objects extracted from the Git repository (see renku show context --list).

  • Uses PROV-O and WFPROV as provenance vocabularies and generates “stable” object identifiers (@id) for RDF and JSON-LD output formats.

  • Refactors the log output to allow linking files and directories.

  • Adds support for aliasing tools and workflows.

  • Adds option to install shell completion (renku --install-completion).

  • Fixes initialization of Git submodules.

  • Uses relative submodule paths when appropriate.

  • Simplifies external storage configuration.

v0.2.0

(released 2018-09-25)

  • Refactored version using Git and Common Workflow Language.

v0.1.0

(released 2017-09-06)

  • Initial public release as Renga.