Source code for renku.models.cwl.types
# -*- coding: utf-8 -*-
#
# Copyright 2018 - Swiss Data Science Center (SDSC)
# A partnership between École Polytechnique Fédérale de Lausanne (EPFL) and
# Eidgenössische Technische Hochschule Zürich (ETHZ).
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Represent the Common Workflow Language types."""
import json
import os
import attr
from renku._compat import Path
from ._ascwl import CWLClass, ascwl
[docs]@attr.s
class File(CWLClass):
"""Represent a file."""
path = attr.ib(converter=Path)
def __str__(self):
"""Simple conversion to string."""
# TODO refactor to use `basedir`
return os.path.relpath(
os.path.realpath(str(self.path)), os.path.realpath(os.getcwd())
)
[docs]@attr.s
class Directory(CWLClass):
"""Represent a directory."""
# TODO add validation to allow only directories
path = attr.ib(default=None)
listing = attr.ib(default=attr.Factory(list))
def __str__(self):
"""Simple conversion to string."""
# TODO refactor to use `basedir`
return os.path.relpath(
os.path.realpath(str(self.path)), os.path.realpath(os.getcwd())
)
DIRECTORY_EXPRESSION = '$({0})'.format(
json.dumps(ascwl(Directory(), filter=lambda _, x: x is not None))
)
PATH_OBJECTS = {'File', 'Directory'}
PATH_TYPES = (File, Directory)
[docs]@attr.s
class Dirent(object):
"""Define a file or subdirectory."""
entryname = attr.ib(default=None)
entry = attr.ib(default=None)
writable = attr.ib(default=False)